Paper

08/2025:🧬 The AI4Bread team has published a new paper titled “Dual Balanced Augmented Topological Non-coding RNA Disease Triplet Association in Heterogeneous Graphs”. The proposed DBATNDA model introduces a novel dual-balanced augmentation strategy to enhance graph structure representation, significantly improving the accuracy and generalization of ncRNA–disease and ncRNA–ncRNA–disease triplet association predictions.
Aug 3, 2025 0 min read
05/2025:🌟 The AI4Bread team has released a new preprint on bioRxiv titled “Separable Spatial Single-cell Transcriptome Representation Learning”. The proposed S3RL framework enhances spatial resolution and biological signal recovery in spatial transcriptomics, showing strong performance across tumor, embryo, and plant samples. It also reveals hidden spatial patterns such as ligand-receptor signals and gene expression gradients.
May 19, 2025 0 min read
04/2025:🎉🎉One paper is accepted by IEEE Transactions on Knowledge and Data Engineering. In this work, we proposed a Triangle Topology Enhancement (T2E) module and designed MGC-T2E for improving multi-view graph clustering performance.
Apr 18, 2025 0 min read
04/2025:🎉🎉One paper is officially published by Nature. In this work, we present a nearly complete pan-genome of autotetraploid European potato, we describe extraordinarily high sequence diversity in a domesticated crop, and we outline how this resource might be used to accelerate genomics-assisted breeding and research.
Apr 16, 2025 0 min read
03/2025:🎉🎉One paper is officially published by npj Heritage Science(1st ranking journal of the Chinese Academy of Sciences). In this work, we proposed a strategy for the enhancement and restoration for mural image under low-light and defected conditions.
Mar 7, 2025 0 min read
03/2025:🎉🎉One paper is officially published by IEEE/CAA Journal of Automatica Sinica(1st ranking journal of the Chinese Academy of Sciences). In this work, we proposed Parallel Seeds, a framework generated from Foundation Models to Foundation Intelligence for Agricultural Sustainability. Congrats to our team's work!!!
Mar 5, 2025 0 min read
12/2024:🎉🎉One paper is selected as BEST PAPER at IEEE DTPI(Officially Online). Congrads to All the Authors!!! In this work, we use user historical data and information from similar user profiles to more accurately capture the user linguistic feature within dialogue subtasks.
Dec 12, 2024 0 min read
11/2024:🎉🎉One paper is accepted by Heritage Science. In this work, we proposed a strategy for the enhancement and restoration for mural image under low-light and defected conditions.
Nov 21, 2024 0 min read
10/2024:🎉🎉One paper is accepted and published by Bioinformatics. In this work, we proposed a strategy for estimating genome size of polyploid species using k-mer frequencies.
Oct 30, 2024 0 min read
10/2024:🎉🎉One paper is accepted and published by Briefings in Bioinformatics. In this work, an asymmetric graph contrastive learning framework for predicting noncoding RNA–disease associations is proposed.
Oct 23, 2024 0 min read